Mona Parizadeh's repositories
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
MicrobiomeBioinformaticsAnalysisWorkshop2023
Oswaldo Cruz Foundation - Rio de Janeiro, Brazil (April 2023)
acadie_16s
Analysis of the phyllosphere and soil bacterial communities (16S amplicon sequencing)
2020_global_nematode_dataset
Global Nematode Dataset
acadie_18s
Analysis of the soil nematode communities and nematode-bacteria co-occurrence networks
AstrobioMike.github.io
Site to help biologists wade their way into bioinformatics.
BIOME
BIOinformatics for MEtabarcoding
graphlan
Tools for visualization phylogenetic trees and annotations from a Bitbucket repository: https://bitbucket.org/nsegata/graphlan/wiki/Home
lab_scripts
useful scripts for lab members
MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
metaphlan-plot-by-taxa
Python script to convert the metagenomic profile txt file to taxa level plots in python's bokeh and R's phyloseq
microbiome
microbiome R package
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
RNA-secondary-structure
Bioinformatics class project
Shell_Intro_for_Bioinformatics_STG
Intro to Shell for Bioinformatics - with STG examples
Template-Elsevier-CAS-DC
A template repository for quickly setting up papers to be submitted to Elsevier Journals
Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
wesanderson
A Wes Anderson color palette for R