mdehollander

UniGetUI

UniGetUI: The Graphical Interface for your package managers. Could be terribly described as a package manager manager to manage your package managers

mollysocket

MollySocket allows getting Signal notifications via UnifiedPush.

mkdocs-material

Documentation that simply works

MAG_Snakemake_wf

Recovery of prokaryotic genomes from shotgun metagenomic sequencing data

nixpkgs

Nix Packages collection & NixOS

mx-puppet-teams

Microsoft Teams puppeting bridge for Matrix

arcticOS-old-and-bad

Old Linux-based version of arcticOS. Now abandoned.

rasusa

Randomly subsample sequencing reads or alignments

biowasm

WebAssembly modules for genomics

InSilicoSeq

:rocket: A sequencing simulator

archivematica

Free and open-source digital preservation system designed to maintain standards-based, long-term access to collections of digital objects.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

reflow

A language and runtime for distributed, incremental data processing in the cloud

pinephone_modem_sdk

Pinephone Modem SDK: Tools to build your own bootloader, kernel and rootfs

multitax

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

CASCABEL

Automated pipeline for amplicon sequence analysis

Metabarcoding

Metabarcoding Pipeline

tinacms

A fully open-source headless CMS that supports Markdown and Visual Editing

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

invenio-app-rdm

Turn-key research data management platform.

cronomix

All-in-one timer, stopwatch, pomodoro, alarm, todo and time tracker gnome-shell extension

todo.txt

‼️ A complete primer on the whys and hows of todo.txt.

pureapi

Tools for working with Elsevier's Pure API.

plenti

Static Site Generator with Go backend and Svelte frontend

spacegraphcats

Indexing & querying large assembly graphs -- in space, no one can hear you miao!

agnostos-wf

pema

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes

grabseqs

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

singularity

Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.

VIBRANT

Virus Identification By iteRative ANnoTation