maximilianh / crisprOtAnalysis

analysis of cirspr/cas9 offtargets

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offtargets.tsv is a big table of crispr offtargets collected from six studies.

The data conversion is done in subdirectories of origData: each has a convert.py file which does the conversion. Or alternatively a file log.txt that documents how the conversion was done. The output is always a file convert.tab which are concatenated into offtargets.tsv column headers are in origData/headers.txt

The score column is usually the fraction of reads that fall on the off-target.

The studies are:

Cho2014 Frock2015 Hsu2013 Kim2015 Ran2015 - not included currently. Unsure where the data is. Tsai2015 Wang2015

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analysis of cirspr/cas9 offtargets


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