maurijlozano

ISCompare

ISCompare, an opensource program to identify Differentially Located Insertion Sequences

CUBACR

Scripts for the codon usage bias analysis of Conserved and Variable regions from core genome proteins.

CUBES

CUBES stands for Codon Usage Bias Evolutionary Scripts

Fasta2modellerPIR

Script to convert 2 sequences fasta alignment to modeller PIR

maurijlozano.github.io

webpage

Biopython-Scripts

CodonUse_Perl-Tools

GB2COG

A python script for COG analysis using Genebank files.

hypar

HyPAR (Hypothetical Protein Annotation Reviser)

STM-seq-count

Perl scripts for STM-NGS sequence tag counting

gbToGFF

A python script to convert NCBI GB to GFF3 compatible with Roary. Also it can be used to extract specific proteins by locus_tag or by size.

LineageDefiner

Lineage Definer is a python script based on ETE3 API for the automatic definition of phylogenetic clusters based on distance from the root node and branch support.

MICROOMICS

Guía de trabajo práctico para el cursos MICROOMICS 2019 - UNRC - Córdoba

Plant-LysM-Domain-HMM

HMM profiles for the identification of LysM domains in plants

SARS-CoV-2-CodonUsage

Supplementary material for the analysis of SARS-CoV-2 synonymous codon usage evolution throughout the COVID-19 pandemic.

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

Stm-Seq-PI

Supplementary_information_for_BIORXIV_DLIS_rhizobia

Supplementary information for BioRXIV: Identification and functional analysis of recent IS transposition events in rhizobia. By Mogro EG. et al 2024