Matthias De Smet's repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
bcbio_docker
Automated Docker builds for bcbio
bioconda-recipes
Conda recipes for the bioconda channel.
cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
conda-forge-staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
eido-feedstock
A conda-smithy repository for eido.
janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
MaxEntScan
MaxEntScan source code, copied from http://genes.mit.edu/burgelab/maxent/Xmaxentscan_scoreseq.html
meinheld-gunicorn-docker
Docker image with Meinheld managed by Gunicorn for high-performance WSGI (Flask, Django, etc) web applications in Python 3.7 and 3.6 with performance auto-tuning. Optionally with Alpine Linux.
mulled
Mulled - Automatized Containerized Software Repository
multi-package-containers
Testing building mulled containers for multi-requirement tools.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
nextflow
A DSL for data-driven computational pipelines
nf-core-demultiplex
UNDER CONSTRUCTION: Demultiplexing pipeline for Illumina sequencing data
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core-tools
Python package with helper tools for the nf-core community.
peppy-feedstock
A conda-smithy repository for peppy.
ubiquerg-feedstock
A conda-smithy repository for ubiquerg.
uvicorn-gunicorn-docker
Docker image with Uvicorn managed by Gunicorn for high-performance web applications in Python 3.7 and 3.6 with performance auto-tuning. Optionally with Alpine Linux.