Matthew Feng's repositories
synbio-core-plasmids
essential synbio plasmids
AlphaFold3
Open source implementation of AlphaFold3
reinforcement-learning-an-introduction
Python Implementation of Reinforcement Learning: An Introduction
machine-learning-cheat-sheet
Classical equations and diagrams in machine learning
equiformer
[ICLR'23 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs
pymol-scripts
useful pymol scripts
tree-diffusion
Diffusion on syntax trees for program synthesis
proteinbert_gen
generative modeling with proteinbert
diffusionbert
applying diffusion bert to generate protein sequences
progen
Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
bioinfdata
commonly used bioinformatics data
bioinfutils
utility library for bioinformatics tasks
synbiobook
the practical synthetic biology book
reference
reference sheets
protein-design
protein design
paper-recs
paper recommendations
curator
curates research papers based on listed interests
refnet
build graphs of papers to read
dna-manipulations
command line tools for biology sequence manipulation
openbiochem
Open source resources for biology, chemistry, and computation.
openmath
Open source math learning resources.
gatsby-book
Gatsby template for writing technical articles.
opendev
Software development resources for everyone.
learn-r
learn R (hands on R, R for data science)
metastasis
solving metastasis
scripts
productivity scripts
minisim
Mini computational chemistry simulation engine
chemutils
utility functions for chemistry in python