Matthew Feng's repositories
openbiochem
Open source resources for biology, chemistry, and computation.
AlphaFold3
Open source implementation of AlphaFold3
bioinfdata
commonly used bioinformatics data
bioinfutils
utility library for bioinformatics tasks
chemutils
utility functions for chemistry in python
diffusionbert
applying diffusion bert to generate protein sequences
dna-manipulations
command line tools for biology sequence manipulation
equiformer
[ICLR'23 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs
gatsby-book
Gatsby template for writing technical articles.
learn-r
learn R (hands on R, R for data science)
machine-learning-cheat-sheet
Classical equations and diagrams in machine learning
metastasis
solving metastasis
opendev
Software development resources for everyone.
openmath
Open source math learning resources.
paper-recs
paper recommendations
progen
Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
protein-design
protein design
proteinbert_gen
generative modeling with proteinbert
pymol-scripts
useful pymol scripts
reading-group
the missing errata for the books and papers you read
redirect2
A low dependency URL shortener.
refnet
build graphs of papers to read
scripts
productivity scripts
synbiobook
the practical synthetic biology book
tree-diffusion
Diffusion on syntax trees for program synthesis