Mathieu Boudreau, PhD's repositories
Gold-Standard-Inversion-Recovery-T1-Mapping
Joelle Barral's gold standard inversion recovery T1 mapping package
matlab_tests
This repository provides a working example of Matlab's testing framework using classes.
orca-plotly-dockerfile
Dockerfile to run Plotly's Orca on MyBinder
qmt-optimization
Quantitative Magnetization Transfer MRI Optimization Toolbox
bloch-seg-pulse-tools
Some miscellaneous tools to generate Bloch-Siegert pulses and calculate the Kbs constant from a pulse file that was used during my PhD. *.pta files were for Siemens scanner, not sure if they are compatible with other vendors.
taylor_mechanics
Solutions to computer problems from the Classical Mechanics textbook by John R. Taylor
anat-processing
Pipeline to process anatomical data, including microstructure metrics from DWI and MT data
GIRFReco.jl
An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia
ilumr-courseware
Courseware for the ilumr educational MRI system
ivadomed
Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
neurolibre-bpt_bcg
Source code for a Neurolibre-ready Jupyter Book
pdf_parser
Script to parse a folder of PDFs for certain keywords. Example in notebook are for open source related keywords.
pulseq
Open source framework for pulse sequences
RF-Tools-in-Octave
RF pulse design tools for Magnetic Resonance Imaging
t1-bloch-simulations
Bloch simulations for T1 mapping techniques developed for ISMRM 2013 abstract
t1_book
Jupyter Book of quantitative T1 MRI http://qmrlab.org/t1_book/
travis-shared-storage-s3
Demo explaining how to share data between TRAVIS jobs using AWS S3