NeuroPoly

totalspineseg

Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

Susceptibility-Separation-Phantom

This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

intranet.neuro.polymtl.ca

NeuroPoly's lab manual

slicercart

template

A framework for creating unbiased MRI templates of the spinal cord

gitea

https://gitea.io fork with https://git-annex.branchable.com support

modular_optuna_ml

Modular framework for automating large-scale permutations of Optuna ML studies

neuro.polymtl.ca

NeuroPoly's Website

bibeasy

Set of tools to manage academic bibliography

distriploy

Release & deployment helper

idea-projects

Ideas for cool projects

paradim-segmentation-brain

Repository for implementing pre-existing brain segmentation models trained with deep learning in PARADIM

phantom-spinoza

CAD model and recipe for MRI head-torso phantom fabrication

changelog

Create a changelog file from all the merged pull requests

coil-qa

Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

pediatric-DL-registration

ansible

Ansible roles published to https://galaxy.ansible.com/

ansible-lint

ansible-lint checks playbooks for practices and behavior that could potentially be improved and can fix some of the most common ones for you

AugLab

This repository investigates the influence of different data augmentation strategies on MRI training performance.

bids-hook

Tiny CI server to run bids-validator using Gitea webhooks

BMPD

coda

Deployment and testing repository for https://www.coda-platform.com/

coil-spine7t

Material for the 8Tx/20Rx 7T c-spine coil

cortical-surface64mT

Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

Flux-SynthSeg-Evaluation

Host for interactive figures of a poster presented at the 2025 Flux Conference

infant-longitudinal-registration

pediatric-intra-inter-encoding

sct_timings

Repository for automated, standardized time measurements of SCT scripts.

segmentation-tools-awesome-list

This awesome list refers to different 3D Slicer modules and other open source platforms/softwares/solutions availables for manual segmentation and classification workflows.

single_voxel_mrs_b0_shimming

This repo includes a jupyter notebook to analyze and compare MRS spectra acquired using different B0 shim optimization approaches