mastodon-sc / mastodon-ctc

Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format

The CellTrackingChallenge Mastodon Baseline

...one can find here

Welcome

This is a repository with Java source codes of the Fiji tools related to the Cell Tracking Challenges and to Mastodon.

The tools were developed and the page is maintained by Vladimír Ulman.

Enabling update site in a new or existing Fiji installation:

1. Open Fiji
2. Click menus: 'Help' -> 'Update...'
3. Click 'Manage update sites' in the opened 'ImageJ Updater' dialog
4. Mark the 'Mastodon' and 'CellTrackingChallenge' checkboxes
5. Click 'Close' to close the dialog

License

The tools are licensed with the BSD 2-Clause License.

Notes

Once installed, one can find the tools in the Mastodon, in the Plugins menu. Contact (ulman při fi.muni.cz) for help on how to use it.