Marwan Abdellah's repositories
BlenderSpike
A Blender add-on to bring animations from NEURON
VessMorphoVis
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing morphological skeletons of brain vasculature networks. https://portal.bluebrain.epfl.ch/
cgal
The public CGAL repository, see the README below
cmake_example
Example pybind11 module built with a CMake-based build system
Detectron
FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.
DFCC
MATLAB files for the DFCC approach presented in Shaban et al (2018), Nucleic Acids Research
eht-imaging
Imaging, analysis, and simulation software for radio interferometry
fenics-tutorial
Source files and published documents for the FEniCS tutorial.
fmt
A modern formatting library
GraduationProjectProposal-SBME
A template for graduation project proposal for the department of biomedical engineering, Cairo University.
Hi-D
MATLAB files for the Hi-D approach presented in Shaban, H.; Barth, R.; Recoules, L.; Bystricky, K.; Hi-D: Nanoscale mapping of nuclear dynamics in single living cells. Genome Biology (2020). Released under the GNU General Public License.
jremesh-tools
Blender addon for quad remeshing
marwan-abdellah.com-assets
Assets for marwan-abdellah.com
MB-Lab
MB-Lab is a character creation tool for Blender 2.80, based off of ManuelBastioniLAB
NeuroM
Neuronal Morphology Analysis Tool
neuromorpho
Making use of the REST API (NeuroMorpho.org v7) to query the database
NeuroMorphoVis-1
A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.
nmodl
Code Generation Framework For NEURON MODeling Language
OMesh
OMesh is an adaptive mesh optimization library that is based on the GAMer.
pbrt-v2
Source code for the version of pbrt described in the second edition of "Physically Based Rendering"
pyoptflow
Optical Flow estimation in pure Python
python-mesh-optimization
A scratch repository to code mesh optimization in python based on the GAMer library.
quartet
A tetrahedral mesh generator that does isosurface stuffing with an acute tetrahedral tile.
skeletor
3D skeleton extraction from meshes.
Softwrap
Dynamics for retopology.
terminals-are-sexy
💥 A curated list of Terminal frameworks, plugins & resources for CLI lovers.