martin-steinegger

setcover

linear (time,space) greedy set cover implementation

kraken-protocol

Metagenome analysis using the Kraken software suite

plass-analysis

Benchmark for PLASS paper

academic-kickstart

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

classrepo

ColabFold

Making Protein folding accessible to all via Google Colab!

FAMSA

Algorithm for large-scale multiple sequence alignments (400k proteins in 2 hours and 8BG of RAM)

fold_tree

snakemake pipeline for creating trees from sequence sets

af-protein-universe

bash

bioconda-recipes

Conda recipes for the bioconda channel.

Complete-Striped-Smith-Waterman-Library

EnzymeDesign

FLASH

FLASH (Fast Length Adjustment of SHort reads)

foldcomp

Compressing protein structures effectively with torsion angles

hit-counter

Easily Count Hits 📈 on a Website by Requesting a SVG Displaying Hit Count 🎯

homebrew-science

:beer::microscope: Scientific formulae for the Homebrew package manager

kraken2

The second version of the Kraken taxonomic sequence classification system

KrakenTools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

ksw2

Global alignment and alignment extension

parasail

Pairwise Sequence Alignment Library

personal_website

phaser

phasing and Allele Specific Expression from RNA-seq

responsiblereview

rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

RoseTTAFold2

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

swdiag

Simple aligner

tmalign-wasm