Beast code in Giters

Mark Chen's starred repositories

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

:bar_chart: A universal enrichment tool for interpreting omics data

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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

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R Markdown: The Definitive Guide (published by Chapman & Hall/CRC in July 2018)

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ChIP-seq analysis notes from Ming Tang

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Embeddable genomic visualization component based on the Integrative Genomics Viewer

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Differential expression of RNA-seq data using the Negative Binomial

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MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

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R toolkit for the analysis of single-cell chromatin data

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:dart: ChIP peak Annotation, Comparison and Visualization

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A document introducing generalized additive models.📈

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