manolaz

table

🤖 Headless UI for building powerful tables & datagrids for TS/JS - React-Table, Vue-Table, Solid-Table, Svelte-Table

zulip

Zulip server and web application. Open-source team chat that helps teams stay productive and focused.

PapaParse

Fast and powerful CSV (delimited text) parser that gracefully handles large files and malformed input

isort

A Python utility / library to sort imports.

bedtools2

bedtools - the swiss army knife for genome arithmetic

mantine-datatable

The table component for your Mantine data-rich applications, supporting asynchronous data loading, column sorting, custom cell data rendering, context menus, nesting, Gmail-style batch row selection, dark theme, and more.

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

wdl

Workflow Description Language - Specification and Implementations

mantine-react-table

A fully featured Mantine V5 implementation of TanStack React Table V8, forked from Material React Table

elixir-styler

An @elixir-lang code-style enforcer that will just FIFY instead of complaining

bioawk

BWK awk modified for biological data

Drowsiness_Detection

A simple Drowsiness Detection module for humans. 😴 🚫 🚗

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

lumpy-sv

lumpy: a general probabilistic framework for structural variant discovery

pyleniumio

Bring the best of Selenium and Cypress into a single Python package

ersilia

The Ersilia Model Hub, a repository of AI/ML models for infectious and neglected disease research.

bedtools

A powerful toolset for genome arithmetic.

gatk4-data-processing

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

learn-wdl

Educational materials for learning WDL

UKB_RAP

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

gcta

GCTA software

SAIGE

Development for SAIGE and SAIGE-GENE(+)

caper

Cromwell/WDL wrapper for Python

wdlTools

WDL tools for parsing, type-checking, and more

setup-nextflow

A GitHub action to install Nextflow

capanno

cwl/wdl/sm/nf files, tool and workflow metadata, and input specifications.

eos1xje

ersilia-intro-workshop

This is an introductory course to AI/ML applied to drug discovery

dypfish

Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images

terraform-aws-ec2-airflow

Terraform module to spin up Apache Airflow on an ec2 instance.