mamun41

MOMLIN_softwar

Multimodal and Omics Machine learning integration for drug response biomarker discovery

pasmopy

Patient-Specific Modeling in Python

Mowgli

Single-cell multi-omics integration using Optimal Transport

Comparative_analysis_multi-omics_biomarker

IOBR

IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.

Multi-omics_biomarker

Multi-omics biomarker discovery tool exploiting a gene-gene interaction network

Luminal-B-study

modelling_cca_brca_survival

Code to accompany journal submission "Modelling-based joint embedding of histology and genomics using canonical correlation analysis for breast cancer survival prediction"

scanoncorr

Sparse canonical correlation analysis

multiomics_BRCA_therapy_response

ImmuCellAI

ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset including RNA-Seq and microarray data

paccmann_generator

Generative models for transcriptomic-driven or protein-driven molecular design (PaccMann^RL).

module-6-Integrative-Bioinformatics

Integrative bioinformatics course of the Diplôme Universitaire en Bioinformatique Integrative (DU-Bii)

sciPath_pathway-based-clustering

Improving Single-Cell RNA-seq Clustering by Integrating Pathways

lecture_dtw_notebook_

MOVE_vs_M2SCCA

MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations

Hyeon_et_al_PDAC_Nature_Cance_proteogenomicsr

GraphCON_vis_coupled_oscillator

GraphCON (ICML 2022)

Two_State_Oscillators

Model system with two states exhibiting a change in coherence of oscillations upon state transitions.

SMCCA-GS_SSMCCA_2new

Sparse Multiple Canonical Correlation Analysis

MTS2CCA

Kuramoto_Oscillators_basic

The Complex network of Coupled Oscillators can be replicate by Coupled Oscillators. Kuramoto Oscillators Model represent the Non-Linearly Coupled Oscillators which goes in Phase Transition from Asynchrony to Synchronization.

dbPepVar_related-to-server

functional_control_m

Repository of the code used for the paper "Functional Control of Oscillator Networks"

KuramotoSakaguchiModel_m

Kuramoto - Sakaguchi Model Applet

MOBILE_m

Multi-Omics Binary Integration via Lasso Ensembles (MOBILE)

GCN_multiomics_4new_work

kuramoto

Python implementation of the Kuramoto model

scCTClust_DCCA-torch

A torch implement of CITE-seq clustering method scCTClust

TNBC_analysis1

Code to reproduce TNBC analysis and figures