malonec3

open-kbp

Develop dose prediction models for knowledge-based planning in radiotherapy

deep-image-prior

Image restoration with neural networks but without learning.

rt-utils

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

Autosegmentation-Spatial-Similarity-Metrics

Code for calculating the added path length, false negative path length, and false negative volume..

surface-distance

Library to compute surface distance based performance metrics for segmentation tasks.

unet-workshop

TransUNet

This repository includes the official project of TransUNet, presented in our paper: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation.

Dicom_RT_and_Images_to_Mask

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

datacamp-python-data-science-track

All the slides, accompanying code and exercises all stored in this repo. 🎈

dicom2stl

Python script to extract a STL surface from a DICOM image series.

dicom-contour

NiftyNet

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

conv_arithmetic

A technical report on convolution arithmetic in the context of deep learning

bokeh

Interactive Data Visualization in the browser, from Python

DVH-Analytics-Bokeh

A DVH Database for Clinicians and Researchers (Deprecated)

gdl-fire-4d

General deep learning-based fast image registration framework for clinical thoracic 4D CT data

gancer

Generative Adversarial Networks for Computationally Efficient Radiotherapy

learn-python

📚 Playground and cheatsheet for learning Python. Collection of Python scripts that are split by topics and contain code examples with explanations.

autopep8

A tool that automatically formats Python code to conform to the PEP 8 style guide.

TensorFlowTalks

TensorFlow Meetup Talks

Kaggle-Carvana-Image-Masking-Challenge

Solution based on U-Net for the Kaggle Carvana Image Masking Challenge

Keras-Callbacks

examples of Keras Callbacks

kaggle_ndsb2017

Kaggle datascience bowl 2017

kaggle_ndsb2

3rd place solution for the second kaggle national datascience bowl

DAT4

General Assembly's Data Science course in Washington, DC

pydicom

Read, modify and write DICOM files with python code

dicom-notebooks

Various Python notebooks and scripts

kaggle-dsb2-keras

Keras tutorial for Kaggle 2nd Annual Data Science Bowl

ultrasound-nerve-segmentation

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras

keras-resources

Directory of tutorials and open-source code repositories for working with Keras, the Python deep learning library