madgal / simple_biofx_tutorial

This repo contains a simple pipeline as an example of my approach to bioinformatics

simple_biofx_tutorial

This repo contains a simple pipeline as an example of my approach to bioinformatics

Dependencies

• nextflow version 23.10.1 (https://www.nextflow.io/docs/latest/getstarted.html)
  • sdkman installation
  • Java Corretto 17 (sdk install java 17.0.6-amzn)
• Docker:
  • the "simple_biofx_docker" is used when running the pipeline
    • run the following command
    • docker build . -t "simple_biofx_docker"

Example

Execute the pipeline using nextflow

E.g., nextflow run main.nf -profile local