luckylara's repositories
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
2-D-gaussian-fitting
This is used to fit a 2-d gaussian on a noisy data.
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
ROIselection
Code for selecting ROIs in tif and sbx images
MatlabDAQmx
DAQmx Examples using MATLAB
ScanImageTools
MATLAB tools for running imaging experiments with ScanImage
Drawing-ROIs-without-GUI
Drawing ROIs with a non-graphical user interface
DeepLearnToolbox
Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.
wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images
convert_csv
批量将目录下 exce文件转换成 csv 格式
ClearMap
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
Bpod
Open source rodent behavior measurement and control
AGC_Analysis
Extracting neuronal functional network dynamics via adaptive Granger causality analysis
exportToPPTX
MatLab tool for exporting data to PowerPoint 2007+ files without the need COM-object automation.
ScanImageAPI_Examples
ScanImage API Examples
XX-Net
a web proxy tool
HanSingleCell
Analysis code specific to Han et al.
erplab
ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.
elastix-1
Medical image registration toolkit. This is a clone of the svn repository.
ara_tools
Analysis of mouse brain STP data with respect to the Allen Reference Atlas
elastix
Toolbox for rigid and nonrigid registration of images, cloned from https://github.com/mstaring/elastix
measurePSF
Measure PSF FWHM along different axes
pyqtgraph
pyqtgraph main development repository
masiv
Matlab Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data
matlab-tree
A MATLAB class to represent the tree data structure.
AllenBrainAPI
Access the Allen Brain Atlas API from MATLAB
lasagna
3-D imaging visualisation through slicing
settings_handler
MATLAB class for user settings
matlab_elastix
MATLAB Elastix wrapper
yamlmatlab
Java-based implementation of YAML IO support in MATLAB.