luckylara's repositories
2-D-gaussian-fitting
This is used to fit a 2-d gaussian on a noisy data.
AGC_Analysis
Extracting neuronal functional network dynamics via adaptive Granger causality analysis
AllenBrainAPI
Access the Allen Brain Atlas API from MATLAB
ara_tools
Analysis of mouse brain STP data with respect to the Allen Reference Atlas
Bpod
Open source rodent behavior measurement and control
CaImAn-MATLAB
Complete Matlab pipeline for large scale calcium imaging data analysis
ClearMap
ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
convert_csv
批量将目录下 exce文件转换成 csv 格式
DeepLearnToolbox
Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.
Drawing-ROIs-without-GUI
Drawing ROIs with a non-graphical user interface
elastix-1
Medical image registration toolkit. This is a clone of the svn repository.
erplab
ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.
exportToPPTX
MatLab tool for exporting data to PowerPoint 2007+ files without the need COM-object automation.
HanSingleCell
Analysis code specific to Han et al.
lasagna
3-D imaging visualisation through slicing
masiv
Matlab Streaming Image Viewer - a viewing and analysis platform for ultra-large 3D imaging data
matlab-tree
A MATLAB class to represent the tree data structure.
matlab_elastix
MATLAB Elastix wrapper
MatlabDAQmx
DAQmx Examples using MATLAB
measurePSF
Measure PSF FWHM along different axes
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
pyqtgraph
pyqtgraph main development repository
ROIselection
Code for selecting ROIs in tif and sbx images
ScanImageAPI_Examples
ScanImage API Examples
ScanImageTools
MATLAB tools for running imaging experiments with ScanImage
settings_handler
MATLAB class for user settings
wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images
XX-Net
a web proxy tool
yamlmatlab
Java-based implementation of YAML IO support in MATLAB.