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Lucian Smith (luciansmith)

luciansmith

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Lucian Smith's starred repositories

ReactionNetworkEvolution.jl

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SemGen

A tool for semantics-based annotation and composition of biosimulation models

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biosimulations

A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results

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sbml-specifications

The specification documents for SBML.

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antimony

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libxml2

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sbml2matlab

An SBML to MATLAB Converter

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RoadRunner.jl

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SBviper

Unit tests for models in systems biology

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phrasedml

Git mirror of https://sourceforge.net/projects/phrasedml/

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reproducible-biomodel-case-study

Reproducible case studies from BioModels

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SRES

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poco

The POCO C++ Libraries are powerful cross-platform C++ libraries for building network- and internet-based applications that run on desktop, server, mobile, IoT, and embedded systems.

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teUtils

Tellurium Utilities

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libroadrunner-deps

Dependencies for libroadrunner

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rr-libstruct

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libOmexMeta

libOmexMeta is a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.

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roadrunner

libRoadRunner: A high-performance SBML simulator

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SBstoat

Parameter optimization using Tellurium

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libsbml-draw

Reads in an SBML file, and displays the network by generating a layout or using an existing layout. The SBML layout info can be saved to a new file.

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tellurium

Python Environment for Modeling and Simulating Biological Systems

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