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LSO (lsoustelle)

lsoustelle

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LSO's starred repositories

DESIGNER-v2

Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline Version 2

Language:CLicense:NOASSERTIONStargazers:17Issues:0Issues:0

RFPA_drift

Scripts used for correcting RFPA drift

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dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

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niimath

niimath - a clone of fslmaths. Try the live demo:

Language:CLicense:NOASSERTIONStargazers:53Issues:0Issues:0

awesome-preclinical-diffusion-mri

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S2-Sampling-Toolbox

Toolbox for generating sptially uniform sampling patterns and decompositions of a unit sphere

Language:MATLABLicense:MITStargazers:34Issues:0Issues:0

dmritool

DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).

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itksnap

ITK-SNAP medical image segmentation tool

Language:C++License:GPL-3.0Stargazers:299Issues:0Issues:0

ANTsPyNet

Pre-trained models and utilities for deep learning on medical images in Python

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ANTs

Advanced Normalization Tools (ANTs)

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Synb0-DISCO

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

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BartIO.jl

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mrsd

A toolkit to generate MR sequence diagrams

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erwin

Quantitative MRI toolbox in Python

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bart-webinars

Landing page for BART Webinars

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dicomifier

A medical image converter

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mcDESPOT

Code to simulate mcDESPOT parameter estimation and investigate search-space degeneracy. Key scripts: search-space sampling is performed using "mcDESPOT_SP.m" and Monte Carlo simulations are performed using "mcDESPOT_MC.m".

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remmi-matlab

Matlab toolbox to reconstruct and process MRI data

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AZTEK

Computation of AZTEK trajectories for 3D radial UTE MR acquistions

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SEQ_BRUKER_A_MP2RAGE_CS_PUBLIC

Compiled sequence and reconstruction of the MP2RAGE + CS sequence for Bruker scanner

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Anima-Public

Open source software for medical image processing from the Empenn team

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mppca_denoise

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gradunwarp

Gradient Unwarping in Python

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sycomore

MRI simulation toolkit

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ihMT_steadystate

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greedy

Very fast greedy diffeomorphic registration code

Language:C++License:GPL-3.0Stargazers:62Issues:0Issues:0

MERA

Multi Exponential Relaxation Analysis toolbox for MATLAB

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EPG-X

Extended Phase Graphs for systems with Magnetization Transfer and Chemical Exchange

Language:MATLABLicense:MITStargazers:39Issues:0Issues:0

wsl-path-converter

Convert between Linux and Windows path in WSL

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