longbow0's repositories
metagenomics-classification-tools
A survey of metagenomics sequence classification tools
bioutils
Routine utilities for seuqnece operation
shadowsocks-windows
If you want to keep a secret, you must also hide it from yourself.
p2pspider
DHT Spider + BitTorrent Client = P2P Spider
tcp_nanqinlang
BBR Enhancement
vsearch
Versatile open-source tool for metagenomics
diamond
Accelerated BLAST compatible local sequence aligner.
Command-line-text-processing
:zap: From finding text to search and replace, from sorting to beautifying text and more :art:
PocketFakeGPS
口袋助理设置定位打卡
treedater
Scalable relaxed clock phylogenetic dating
jobTree
Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)
graphmap
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
coursera-dl
Script for downloading Coursera.org videos and naming them.
books
【编程随想】收藏的电子书清单(多个学科,含下载链接)
kms-server
a docker image for kms
v2ray-core
A platform for building proxies to bypass network restrictions.
marginAlign
UCSC Nanopore
viral-ngs
Viral genomics analysis pipelines
Burntrees
Perl scripts for manipulating output from phylogenetic MCMC software (MrBayes, BEAST, PhyloBayes, etc)
ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
500lines
500 Lines or Less
AEGIS
Analysis of Epistasis & Genomic Interacting Sites
influenza_H3N2_passaging
Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)
mce-examples
Many-Core Engine for Perl - Examples
PhyloNetworks.jl
A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks
influenza-reassortment-detector
Scripts for running the influenza reassortment detector
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences