longbow0

longbow0

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cwl

From https://bitbucket.org/CRSwDev/cwl/src/master/

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500lines

500 Lines or Less

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AEGIS

Analysis of Epistasis & Genomic Interacting Sites

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bioutils

Routine utilities for seuqnece operation

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books

【编程随想】收藏的电子书清单(多个学科,含下载链接)

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Burntrees

Perl scripts for manipulating output from phylogenetic MCMC software (MrBayes, BEAST, PhyloBayes, etc)

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bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

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Command-line-text-processing

:zap: From finding text to search and replace, from sorting to beautifying text and more :art:

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coursera-dl

Script for downloading Coursera.org videos and naming them.

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diamond

Accelerated BLAST compatible local sequence aligner.

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ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

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graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html

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influenza-reassortment-detector

Scripts for running the influenza reassortment detector

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influenza_H3N2_passaging

Data and code for McWhite et al., Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin, Virus Evolution (2016)

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jobTree

Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)

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kms-server

a docker image for kms

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marginAlign

UCSC Nanopore

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mce-examples

Many-Core Engine for Perl - Examples

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metagenomics-classification-tools

A survey of metagenomics sequence classification tools

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p2pspider

DHT Spider + BitTorrent Client = P2P Spider

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PhyloNetworks.jl

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

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PocketFakeGPS

口袋助理设置定位打卡

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shadowsocks-windows

If you want to keep a secret, you must also hide it from yourself.

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tcp_nanqinlang

BBR Enhancement

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treedater

Scalable relaxed clock phylogenetic dating

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v2ray-core

A platform for building proxies to bypass network restrictions.

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viral-ngs

Viral genomics analysis pipelines

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vsearch

Versatile open-source tool for metagenomics

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