lonelyjoeparker

QUOREM

QUOREM: Query, Unify, and Organize Research on the Ecology of Microorganisms

dotPlotly

Generate an interactive dot plot from mummer or minimap alignments

phycorder

pipeline to place taxa in a phylogeny using NGS reads

extensiphy_fork

Pipeline to place taxa in a sequence alignment and phylogeny using NGS reads

Eagle

Scripts and other files relevant to simulating the Apollo 11 Lunar Module orbit

XChart

XChart is a light-weight Java library for plotting data.

clusterflock

fastqe

FASTQ sequence quality visualisation with Emoji

manim

Animation engine for explanatory math videos

teaspoon

A package for sequence analysis of serially-sampled populations

Mykrobe-predictor

Antibiotic resistance predictions in minutes on a laptop

nanocall

An Oxford Nanopore Basecaller

LittleBookofRTimeSeries

APIS

Initial version of Automated Phylogenetic Inference System in preparation for public release

phlawd

phylogenetics with databases

nanopore

Software for nanopore data analysis

MASTER

A versatile simulation engine for stochastic population dynamics models.

readthedocs

Documentation for the Google Genomics cookbook.

standard-RAxML

Spoon-Knife

This repo is for demonstration purposes only.

BioDSL

BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.

NZGOT

The toolkit to analyse various types of data collected from New Zealand Genomic Observatory project

beast2

Bayesian Evolutionary Analysis by Sampling Trees

qmul-genome-convergence-pipeline

API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence