Joe Parker's repositories
befi-bats-gui
Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
real-time-phylogenomics
A sandbox and development repo for projects in real-time phylogenomics application development
QMUL-MSc-BIO782P-stats-bioinfo
Labs content for 2017 & 2018 QMUL MSc Bioinformatics BIO782P (Stats & bioinformatics) module
qmul-genome-convergence-pipeline
API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence
oddjects-sandbox
Sandbox for odd projects, mainly R / Python and mainly bioinformatics or spatial/policy social data
convergence-utils-sandbox
Sandbox for genomic convergent evolution detection utils
cutter
A Qt and C++ GUI for radare2 reverse engineering framework
databmstdr
Data sets and additional useful functions for modelling spatio-temporal data
dotPlotly-issue-18
Generate an interactive dot plot from mummer or minimap alignments - fixes issue 18
hiv-hadpack
Automatically exported from code.google.com/p/hiv-hadpack
lonelyjoeparker.github.io
Build a Jekyll blog in minutes, without touching the command line.
makeyourownneuralnetwork
Code for the Make Your Own Neural Network book
ml-inference-sandbox
Automatically exported from code.google.com/p/ml-inference-sandbox
MSc-phylogenetics-lab
Collection of data and scripts used in a 3-hour phylogenetics introductory lab for the Kew/QMUL MSc in plant-and-fungal-taxonomy-diversity-and-conservation
poretools
a toolkit for working with Oxford nanopore data
Spoon-Knife
This repo is for demonstration purposes only.
teaspoon
A package for sequence analysis of serially-sampled populations