loganylchen

ggstatsplot

Enhancing {ggplot2} plots with statistical analysis 📊📣

tsne-cuda

GPU Accelerated t-SNE for CUDA with Python bindings

aidea

AIdea 是一款支持 GPT 以及国产大语言模型通义千问、文心一言等，支持 Stable Diffusion 文生图、图生图、 SDXL1.0、超分辨率、图片上色的全能型 APP。

rapidgzip

Gzip Decompression and Random Access for Modern Multi-Core Machines

kmer_models

Predictive kmer models for development use

slow5-dorado

A LibTorch Basecaller for Oxford Nanopore Reads

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

Python

All Algorithms implemented in Python

dorado

Oxford Nanopore's Basecaller

pod5-file-format

Pod5: a high performance file format for nanopore reads.

notion-sdk-py

The official Notion API client library, but rewritten in Python! (sync + async)

cudadtw

GPU-Suite

cuda-python

CUDA Python Low-level Bindings

OpenDBA

GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging

Learn-CUDA-Programming

Learn CUDA Programming, published by Packt

deeplearning-biology

A list of deep learning implementations in biology

PlotNeuralNet

Latex code for making neural networks diagrams

scRNA-seq

ThermoRawFileParser

Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

scBio

Single Cell Genomics for Enhancing Cell Composition Inference from Bulk Genomics Data

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

ProtoBuf.jl

Julia protobuf implementation

survminer

Survival Analysis and Visualization

SquiggleKit

SquiggleKit: A toolkit for manipulating nanopore signal data

OffsetBasedGraph

Python package for handling genomic offset-based graphs

graph-genomics-review

Pangenome graphs (review article on graph-based pangenomic methods)

paragraph

Graph realignment tools for structural variants

kBET

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

julia

The Julia Programming Language