Yuelong Chen's starred repositories
ggstatsplot
Enhancing {ggplot2} plots with statistical analysis 📊📣
kmer_models
Predictive kmer models for development use
slow5-dorado
A LibTorch Basecaller for Oxford Nanopore Reads
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
pod5-file-format
Pod5: a high performance file format for nanopore reads.
notion-sdk-py
The official Notion API client library, but rewritten in Python! (sync + async)
cuda-python
CUDA Python Low-level Bindings
Learn-CUDA-Programming
Learn CUDA Programming, published by Packt
deeplearning-biology
A list of deep learning implementations in biology
PlotNeuralNet
Latex code for making neural networks diagrams
ThermoRawFileParser
Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
ont_fast5_api
Oxford Nanopore Technologies fast5 API software
ProtoBuf.jl
Julia protobuf implementation
SquiggleKit
SquiggleKit: A toolkit for manipulating nanopore signal data
OffsetBasedGraph
Python package for handling genomic offset-based graphs
graph-genomics-review
Pangenome graphs (review article on graph-based pangenomic methods)
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard