yanwu2014 / swne

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

yanwu2014/swne Issues

SWNE bioconductor compatability
Closed a year ago
how to use contour.geom in PlotSWNE
Closed 2 years ago
there is a error in "RunSWNE(obj, k = 16, genes.embed = genes.embed)"
Updated 2 years ago
installation error
Closed 3 years ago7
hemato_swne_pseudotime_plot fail to function
Updated 3 years ago
re variable genes used does not match
Updated 3 years ago
Seurat- SCTransform compatibility?
Closed 4 years ago4
Transferring metadata from a Seurat object into SWNE
Closed 4 years ago1
Error running RunSWNE
Closed 4 years ago2
Error in as(object@graphs$RNA_snn, "dgCMatrix")
Closed 5 years ago4
Same code, different SWNE imbeddings
Closed 5 years ago1
Seurat V3 Workflow
Closed 5 years ago13
Bringing a seurat v3 object into SWNE
Closed 5 years ago2
Unable to replicate results for SWNE Walkthrough using Seurat
Closed 5 years ago13
SWNE plotting on Tabular Data
Closed 6 years ago8
Offical Seurat 3.0 Tutorial
Closed 6 years ago2
Error during execution of "Gene Expression Quickstart with Seurat"
Closed 6 years ago2
OpenBLAS Warning for FindNumFactors
Closed 6 years ago3
Unlisted dependencies
Closed 6 years ago2
Installation error -- Velocyto
Closed 6 years ago2
some bugs in testing "1. A basic walkthrough of 3k PBMC cells starting from a pre-computed Seurat object."
Closed 6 years ago3
Change in behaviour (output) of FindNumFactors
Closed 6 years ago4
primary steps uploading seurat object
Closed 6 years ago15
Formatting issue in error message
Closed 6 years ago1
SWNE plotting of samples subsets
Closed 6 years ago2
mitochondrial/UMI regression
Closed 6 years ago1
EmbedSWNE fails
Closed 7 years ago2
Error with k=2
Closed 7 years ago1