Liz Ing-Simmons's repositories
djangogirls-blog
A simple Django blog app
signac
R toolkit for the analysis of single-cell chromatin data
2023-07-04-sussex
Website for Data Carpentry workshop (Social Sciences with Python) at the University of Sussex
scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
seurat
R toolkit for single cell genomics
epoch
gene regulatory network reconstruction from scRNA-Seq
chess
Comparison of Hi-C Experiments using Structural Similarity.
scSplitter
tool for preprocessing scRNA-seq data for mutation calling
liz-website
Personal website
fanc
FAN-C: Framework for the ANalysis of C-like data
clodius
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
2019-03-11-maxplanck2
https://liz-is.github.io/2019-03-11-maxplanck2/
ctcf-motif-imr90
Calculation of CTCF motif directions for IMR90
heatmaps
Plotting package originally based around the seqPattern Bioconductor package. Still very much in development.
R-genomics
Lesson on data analysis and visualization in R for genomics
svm-r-markdown-templates
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.
r-novice-gapminder
Introduction to R for non-programmers using gapminder data.
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
soggi
Summarising Over Grouped Genomic Intervals
SC-ICS-Proposal
Software Carpentry ICS proposal