liz-is

qpcr-analysis-with-r

readhic

Read HiC data from Rao, Huntley et al. 2014

2018-01-29-maxplanck

ctcf-motif-imr90

Calculation of CTCF motif directions for IMR90

2016-05-05-edinburgh

2019-03-11-maxplanck

2019-03-11-maxplanck2

https://liz-is.github.io/2019-03-11-maxplanck2/

2023-07-04-sussex

Website for Data Carpentry workshop (Social Sciences with Python) at the University of Sussex

adventofcode2018

chess

Comparison of Hi-C Experiments using Structural Similarity.

clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

djangogirls-blog

A simple Django blog app

epoch

gene regulatory network reconstruction from scRNA-Seq

fanc

FAN-C: Framework for the ANalysis of C-like data

genomics-workshop

heatmaps

Plotting package originally based around the seqPattern Bioconductor package. Still very much in development.

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

liz-is.github.io

liz-website

Personal website

planets

planets-icr

R-genomics

Lesson on data analysis and visualization in R for genomics

r-novice-gapminder

Introduction to R for non-programmers using gapminder data.

SC-ICS-Proposal

Software Carpentry ICS proposal

scenicplus

SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

scSplitter

tool for preprocessing scRNA-seq data for mutation calling

seurat

R toolkit for single cell genomics

signac

R toolkit for the analysis of single-cell chromatin data

soggi

Summarising Over Grouped Genomic Intervals

svm-r-markdown-templates

I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.