Xiaoping Li's repositories
dash-bootstrap-components
Bootstrap components for Plotly Dash
agrimet_scraper
Collects weather data from AgriMet
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
Bioinformatics_miniseries
bioinformatics_miniseries
biom-format
The Biological Observation Matrix (BIOM) Format Project
coding-interview-university
A complete computer science study plan to become a software engineer.
dada2
Accurate sample inference from amplicon data with single nucleotide resolution
DailyCodingProblem
Record my solution to the book Daily Coding Problem
decontam
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
folium
Python Data. Leaflet.js Maps.
freeCodeCamp
The https://www.freeCodeCamp.org open source codebase and curriculum. Learn to code for free together with millions of people.
get-programming-with-nodejs
Code samples for Get Programming with Node.js (See verhagen's VM setup for exercises in this book: https://github.com/verhagen/get-programming-with-nodejs)
Hands-On-Data-Analysis-with-Pandas
Materials for following along with Hands-On Data Analysis with Pandas.
js-xlsx
:green_book: SheetJS Community Edition -- Spreadsheet Parser and Writer
leaflet-providers
An extension to Leaflet that contains configurations for various free tile providers.
markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
metacal
Metagenomics calibration R package
micom
Python package to study microbial communities using metabolic modeling.
Microbial-bioinformatics-introductory-course-Material-2018
Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL
microDecon
An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
node-fs-extra
Node.js: extra methods for the fs object like copy(), remove(), mkdirs()
pandas_exercises
Practice your pandas skills!
phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Python
All Algorithms implemented in Python
Python-for-Probability-Statistics-and-Machine-Learning-2E
Second edition of Springer Book Python for Probability, Statistics, and Machine Learning
q2-fragment-insertion
QIIME 2 plugin for fragment insertion
scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
VIM-Editor-Mind-Map
This is a mind map about how to use vim editor