Xiaoping Li's repositories
Anti-desiccant_impact
Scripts used to analyze anti-desiccant impacts on the boxwood phyllosphere microbiome
garden-soil-microbiome
materials used for analyzing garden soil microbiome paper
CO1Classifier
This repository contains CO1 reference sets that can be used with the RDP Classifier to classify CO1 metabarcode sequences.
ComplexHeatmap
Make Complex Heatmaps
earthnetwork
Microbial co-occurrence network inferred from Earth Microbiome Project
isb_course_2020
Materials and tutorials for the 2020 ISB Microbiome Course
johnson_lb_app
Johnson potato lateblight model
lixiaopi1985.github.io
hugo porfolio site
Microbiome-Analysis-Using-R
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
nanopolish
Signal-level algorithms for MinION data
NCBI_Companion
NCBI_Companion targets to construct database from Genbank implementing its API.
OMA
Orchestrating Microbiome Analysis
performance
:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
PLANiTS
PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding
Profiling-of-the-soil-microbiome-sturcture-as-a-function-of-cultural-practices-used-in-the-PNW
This repository contained the scripts used in the paper "Profiling of the soil microbiome structure as a function of cultural practices used in the Pacific Northwest potato cropping system"
raindrops_in_the_ocean
🎓 Hugo Academic Theme 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
sand
Statistical Analysis of Network Data with R, 2nd Edition
Soil_microbial_communities_responding_to_metam_sodium
R codes for the manuscript "Legacy effects of fumigation on soil bacterial and fungal communities and their response to metam sodium application"
Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
wallin-blite-cast
A web applicaiton for pototato late blight forecasting in Columbia Basin