Xiaoping Li's repositories
Anti-desiccant_impact
Scripts used to analyze anti-desiccant impacts on the boxwood phyllosphere microbiome
garden-soil-microbiome
materials used for analyzing garden soil microbiome paper
cdhit
Automatically exported from code.google.com/p/cdhit
CO1Classifier
This repository contains CO1 reference sets that can be used with the RDP Classifier to classify CO1 metabarcode sequences.
ComplexHeatmap
Make Complex Heatmaps
earthnetwork
Microbial co-occurrence network inferred from Earth Microbiome Project
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
isb_course_2020
Materials and tutorials for the 2020 ISB Microbiome Course
johnson_lb_app
Johnson potato lateblight model
lixiaopi1985.github.io
hugo porfolio site
Microbiome-Analysis-Using-R
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
microbiome_helper
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
nanopolish
Signal-level algorithms for MinION data
NCBI_Companion
NCBI_Companion targets to construct database from Genbank implementing its API.
OMA
Orchestrating Microbiome Analysis
performance
:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
PLANiTS
PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding
Profiling-of-the-soil-microbiome-sturcture-as-a-function-of-cultural-practices-used-in-the-PNW
This repository contained the scripts used in the paper "Profiling of the soil microbiome structure as a function of cultural practices used in the Pacific Northwest potato cropping system"
raindrops_in_the_ocean
🎓 Hugo Academic Theme 创建一个学术网站. Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify.
sand
Statistical Analysis of Network Data with R, 2nd Edition
Soil_microbial_communities_responding_to_metam_sodium
R codes for the manuscript "Legacy effects of fumigation on soil bacterial and fungal communities and their response to metam sodium application"
Tools-Microbiome-Analysis
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
wallin-blite-cast
A web applicaiton for pototato late blight forecasting in Columbia Basin