liuchuan111

TimeMachine

Doing-Meta-Analysis-in-R

[Read-Only] All R code and source files for the online guide "Doing Meta-Analysis with R: A Hands-On Guide"

Lumina-T2X

Lumina-T2X is a unified framework for Text to Any Modality Generation

OmicsIntegrator2

Prize-Collecting Steiner Forests for Interactomes

proteomic-age-ukb

ARSER

Periodicity detection algorithm for evenly spaced circadian gene expression data

MetaCycle

An integrated R package to evaluate periodicity in large scale data

berkeley-stat-157

Homepage for STAT 157 at UC Berkeley

SNPhylo

A pipeline to generate a phylogenetic tree from huge SNP data

ProtTrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

tauFisher

Circadian time prediction from genomic data.

ComBat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data

Open-Sora

Open-Sora: Democratizing Efficient Video Production for All

PhyloSuite

PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

RoseTTAFold-All-Atom

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Trimmomatic

workflowr

Organize your project into a research website

Dap-Seq-pipeline

TF-DNA-binding assay analysis pipeline

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

proxy_configuration

System wide proxy configuration in a single script with options to add, remove proxy and restore system default proxy configuration

tinyproxy

tinyproxy - a light-weight HTTP/HTTPS proxy daemon for POSIX operating systems

CUTTag_tutorial

Tutorial Website

zotero-night

Night theme for Zotero UI and PDF

diffCircadian

Differential circadian analysis

protein_bert

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

biobert

Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining

biobert-pretrained

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被70多个国家的500多所大学用于教学。