Chuan Liu's repositories
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
benchmark_eval
Benchmark Evaluation of Protein–Protein Interaction Prediction Algorithms
bioinfokit
Bioinformatics data analysis and visualization toolkit
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
CUT-RUNTools-2.0
CUT&RUN and CUT&Tag data processing and analysis
Dap-Seq-pipeline
TF-DNA-binding assay analysis pipeline
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
liuchuan111
Config files for my GitHub profile.
LSTM-PHV
PPI with LSTM-PHV
Machine-Learning-Collection
A resource for learning about Machine learning & Deep Learning
MSK-IMPACT-IO
2022.nbt.Improved prediction of immune checkpoint blockade efficacy across multiple cancer types
oneliners
Useful bash one-liners for bioinformatics.
RNAseq-analysis
RNAseq analysis notes from Ming Tang
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
StackPPI
Improving protein-protein interactions prediction accuracy using XGBoost feature selection and stacked ensemble classifier
TO-GCN
Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data