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liu3c

liu3c

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PMRreproduce

Language:RStargazers:2Issues:0Issues:0

fusion_twas

methods for functional summary-based imputation

Language:RLicense:GPL-3.0Stargazers:70Issues:0Issues:0

gw

Genome browser and variant annotation

Language:C++License:MITStargazers:146Issues:0Issues:0

ggcirclize

Creating Circular Graph with the Grammar of GGplot2

Language:RLicense:NOASSERTIONStargazers:17Issues:0Issues:0

universalmotif

Motif manipulation functions for R.

Language:RLicense:GPL-3.0Stargazers:23Issues:0Issues:0

org.Osativa.eg.db

Language:RStargazers:17Issues:0Issues:0

LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Language:PerlLicense:MITStargazers:129Issues:0Issues:0

LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Language:PerlLicense:MITStargazers:18Issues:0Issues:0

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

Language:PythonLicense:GPL-3.0Stargazers:60681Issues:0Issues:0

ggh4x

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

Language:RLicense:NOASSERTIONStargazers:531Issues:0Issues:0

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Language:CLicense:NOASSERTIONStargazers:1713Issues:0Issues:0

plotsr

Tool to plot synteny and structural rearrangements between genomes

Language:PythonLicense:MITStargazers:268Issues:0Issues:0

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Language:NextflowLicense:MITStargazers:176Issues:0Issues:0

hot_scan

hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics

Language:PerlLicense:GPL-2.0Stargazers:6Issues:0Issues:0

svimmer

Structural variant merging tool

Language:PythonStargazers:43Issues:0Issues:0

HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Language:PythonLicense:GPL-3.0Stargazers:221Issues:0Issues:0

HiCPlotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

Stargazers:17Issues:0Issues:0

hic_breakfinder

Language:RoffLicense:MITStargazers:33Issues:0Issues:0

Juicebox

Visualization and analysis software for Hi-C data -

Language:JavaLicense:MITStargazers:233Issues:0Issues:0

hashmap

Faster hash maps in R

Language:C++License:NOASSERTIONStargazers:81Issues:0Issues:0

HiCtrans

HiCtrans is a pipeline to call translocations from Hi-C data

Language:RStargazers:15Issues:0Issues:0

svmu

A program to call variants from genome alignment

Language:C++License:GPL-3.0Stargazers:74Issues:0Issues:0

syri

Synteny and Rearrangement Identifier

Language:CythonLicense:MITStargazers:299Issues:0Issues:0

Assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

Language:JavaScriptLicense:MITStargazers:135Issues:0Issues:0

GWIFA

Genome-wide interaction fluctuation analysis

Language:PythonStargazers:4Issues:0Issues:0

HiNT

HiC for copy Number variation and Translocation detection

Language:PythonLicense:MITStargazers:35Issues:0Issues:0

gemma-nf

A Nextflow pipeline for multivariate GWAS using GEMMA

Language:NextflowLicense:GPL-3.0Stargazers:3Issues:0Issues:0

eQTL_XGBoost

Stargazers:5Issues:0Issues:0

vcf2phylip

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Language:PythonLicense:GPL-3.0Stargazers:268Issues:0Issues:0

blupADC

blupADC:An useful tool for animal and plant breeding

Language:RLicense:GPL-3.0Stargazers:21Issues:0Issues:0