lindenb / microstatements

cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO

microstatements

Motivation

cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO

How to contribute

• clone this repo
• open data/statements.01.ttl with a text editor
• add your info in the first lines, using your ORCID ID as a unique identifier. e.g:

orcid:0000-0000-0123-456
    rdf:type foaf:Person ;
    foaf:name "your name"
    .

• add a new statements. e.g:

<#stmt1786>
    dc:description "PITX2 and atrial fibrillation" ;
    rdf:type rdf:Statement ;
    rdf:subject obo:MONDO_0004981  ;
    rdf:predicate obo:RO_0004003 ;
    rdf:object hgnc:9005 ;
    dc:creator orcid:0000-0003-0148-9787 ;
    dc:created "2024-05-16"^^xsd:date ; 
    dc:source pmid:38643172
    .

where:

• stmt1786 is a unique name for your statement
• dc:description "PITX2 and atrial fibrillation" is a short description of the statement.
• rdf:subject obo:MONDO_0004981 the subject for this statement statement is http://purl.obolibrary.org/obo/MONDO_0004981 atrial fibrillation
• rdf:predicate obo:RO_0004003 the property for this statement is http://purl.obolibrary.org/obo/RO_0004003 has material basis in germline mutation in
• rdf:object hgnc:9005 the object for this statement is https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:9005 PITX2
• dc:creator orcid:0000-0003-0148-9787 the author for this statement
• dc:created "2024-05-16"^^xsd:date the date this statement was created
• dc:source pmid:38643172 an article supporting this statement : https://pubmed.ncbi.nlm.nih.gov/38643172/ "TAD boundary deletion causes PITX2-related cardiac electrical and structural defects"

• submit the new statement using a pull request.

See also

• https://www.ebi.ac.uk/ols4/
• https://www.genenames.org/
• https://github.com/monarch-initiative/mondo
• https://www.w3.org/2015/03/ShExValidata/ (RDF validation)

License

The project is licensed under the MIT license.

Author

Pierre Lindenbaum PhD