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Pierre Lindenbaum (lindenb)

lindenb

Geek Repo

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Company:INSERM

Location:Nantes, France

Home Page:https://genomic.social/web/@yokofakun

Twitter:@yokofakun

Github PK Tool:Github PK Tool

Pierre Lindenbaum's repositories

makefile2graph

Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.

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jvarkit

Java utilities for Bioinformatics

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xslt-sandbox

My xslt sandbox

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verticalize

Simple tool to verticalize text delimited files.

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jsandbox

My java Sandbox

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hts-rdf

Managing sequencing data with RDF

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gazoduc-nf

Nextflow Pipelines

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rbcf

R Bindings for htslib/bcf

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courses

Courses

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htsplusplus

Select variants from VCF/BCF spaced by a distance 'd'.

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nextflow

A DSL for data-driven computational pipelines

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samtools

Fork of samtools

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bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

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biocontainers

docker containers for bioinformatics on demand using makefiles

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broadgatk

Official code repository for GATK versions 4 and up

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crypt

editor to crypt/decrypt file

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daily-notebook

daily notebook

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delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

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favorites

This is a page about my favorite books,foods,songs movies, etc...

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htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

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htslib

C library for high-throughput sequencing data formats

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microstatements

cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO

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mondo

Mondo Disease Ontology

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

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nfcore-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

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quotes

RDF/XML quotes

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sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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ScanHoxa1

ScanHoxa1

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SVPV

Structural Variant Prediction Viewer

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