Lin Lab

COVID19-Viz

Visualization of COVID-19 spread metrics.

COVID19-Rt

COVID-data-cleaning

COVID-Health-Disparities

iSKAT-GESAT

GESAT/iSKAT tests for ZxE (gene-environment interactions), after accounting for main effects of Z (gene), main effects of E (environment) and X (covariates).

SKAT

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

coxKM

R package for conducting SNP-set association tests for right-censored survival outcomes based on a kernel machine cox regression framework.

MERMAID

Multilevel Epidemic Regression Model to Account for Incomplete Data

apex

GMMAT

R package for GMMAT (Generalized Linear Mixed Model Association Test)

GMMAT_lite

A light version of GMMAT which does not depend on the C++ library boost

CEPSKAT

CEPSKAT extends the SKAT framework to the setting of continuous extreme phenotype samples.

GHC

R package for Generalized Higher Criticism

MetaSKAT

MetaSKAT is a R package for multiple marker meta-analysis across studies.