lemaslab / gatorberry

build a raspberry pi cluster with SLURM installed and assemble viral genome

TITLE OF YOUR PAPER GOES HERE

YOUR PAPER'S ABSTRACT GOES HERE

Overview

project
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|- code/          # any programmatic code	
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|- data/          # raw and processed and analysis data, are not changed once created
| |- analysis/    # analysis data derived from cleaned data
| |- processed/   # cleaned data derived from raw data
| |- raw/         # raw data
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|- exploratory/   # exploratory data analysis for study
| |- notebook/    # preliminary analyses
| +- scratch/     # temporary files that can be safely deleted or lost
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|- presentation/  # powerpoint related to project 	
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|- results        # all output from workflows and analyses
| |- tables/      # text version of tables to be rendered with kable in R
| |- figures/     # graphs, likely designated for manuscript figures
| +- pictures/    # diagrams, images, and other non-graph graphics
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|- CONTRIBUTING   # instructions for how to contribute to this project
|- INSTRUCTIONS   # instructions for how to get started with with github
|- LICENSE        # the license for this project
|- README         # the top level description of content (this doc)

How to regenerate this repository

Dependencies and locations

• Gnu Make should be located in the user's PATH
• R (v. 3.X.X) should be located in the user's PATH
• R packages:
  • knitr
  • rmarkdown
• etc

Running analysis