Lemas Lab's repositories
BEACH-EHR-PRESENTATION
Information regarding presentation on the extraction of data from the Epic EHR database.
ehr-preeclampsia-model
Use mom-baby EHR to validate ShinyApp model. The goal of the project is to predict infant delivery for mothers with preeclampsia.
lemaslab.github.io
The LemasLab website at the University of Florida
reproducible_metabolomics_study_checklist
Checklist for making computational steps of clinical metabolomics study reproducible
ehr-database
Explore descriptive statistics of data we have
Informatics_Team_Meeting_Schedule
Meeting Schedule of Lemas Lab Informatics Team at University of Florida
nlp-perinatal
this repo contains code for the analysis of perinatal clinical notes
awc_lcms_metabolomics
The objective of this study is to develop an automated workflow composition system for LC-HRMS metabolomics data processing.
BEACH-interview
data analysis for BEACH interview study in 40 pregnant and breastfeeding women in Alachua County
gatorberry
build a raspberry pi cluster with SLURM installed and assemble viral genome
Manuscript-DNNs-for-Classification-of-LCMS-Peaks
Code associated with the manuscript: Deep Neural Networks for Classification of LC-MS Spectral Peaks
nlp-recipes
Natural Language Processing Best Practices & Examples
OMOP2OBO
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
pediatric-abx-mod
UFHealth Mom-baby linked electronic health records
r-demo
space to demo r-packages that can be moved to other projects.
RAnalysisSkeleton
Files and settings commonly used in analysis projects with R
shiny-app-template
Template for creating Shiny web applications