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leinmeng

leinmeng

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In-depth-NGS-Data-Analysis-Course

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scRNA_smart_seq2

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ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

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TOBIAS

Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

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xCell

Cell types enrichment analysis

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reg-gen

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

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ARACNe-AP

Network Reverse Engineering through AP inference of Mutual Information

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EPIC

Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

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ImmuneResistance

This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".

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GOSemSim

:golf: GO-terms Semantic Similarity Measures

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sasquatch

Predicting the impact of regulatory SNPs from cell and tissue specific DNase-footprints

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DeMAND-algorithm

The Drug Mechanism of Action Algorithm Developed in the Califano Lab

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ARACNe

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ATAC-seq_footprint_analysis

ATAC-seq analysis

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