broadinstitute / ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

broadinstitute/ssGSEA2.0 Issues

Error in ssGSEA2(input.ds = opt$input.ds, output.prefix = opt$output.prefix, : object 'm' not found
Updated 2 months ago
Error GUI script in R 4.3.3 vs R 4.3.2
Updated 4 months ago
How do I perform ssGSEA on single cell RNA seq data when it has already been preprocessed in Seurat version v5?
Updated 7 months ago
Optimal Gene Filtering for TPM Expression Data in RNA-seq Analysis: Impact of Non-Protein Coding Biotypes on Hallmark Enrichment Analysis
Updated 8 months ago1
More input genes, better results?
Closed 8 months ago2
Different distributions in different RNAseq cohorts
Closed a year ago3
converted to R package
Closed 2 years ago2
bug in combine mode
Closed 2 years ago2
Output only for 11 signatures
Closed 2 years ago2
Combining enrichment scores
Closed 2 years ago
Using the R script, is there any way I can extend the maximum gene set size?
Closed 3 years ago1
p values
Closed 3 years ago1
problems with PTM-Signature Enrichment Analysis (PMT-SEA) by using ssGSEA-gui.R
Closed 4 years ago1
Small test.gct file works fine but whole data.gct gives incorrect number of dimensions error
Closed 4 years ago1
Very sparse documentation on converting files to GCT format.
Closed 4 years ago3
Constant Error
Closed 4 years ago2
why different ssGSEA-scores when i run with the same data and parameter?
Closed 4 years ago1
Sorry，last problem that the result of local R ssGSEA is
Closed 4 years ago3
can not run example gct file PI3K_pert_logP_n2x23936.gct
Closed 4 years ago3
Cant use ssGSEA
Closed 5 years ago
Error using single .gct file
Closed 5 years ago4
why the result scores of GenePattern ssGSEAProjection are different from the results R version？
Closed 5 years ago2
Errors about ssGSEA
Closed 5 years ago1
Error while sourcing the file ssgsea-cli.R
Closed 5 years ago2
Between is misspelled in help text
Closed 5 years ago1
socket issue
Closed 5 years ago2
The exact meaning of "general performance improvements"
Closed 5 years ago2
ssGSEA2 bug in parse.gctx
Closed 6 years ago1
ssgsea-cli.R: 'names' attribute must be same length as the vector
Closed 6 years ago4