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ldamodaran

ldamodaran

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Company:University of Georgia - Institute of Bioinformatics

Twitter:@LD__50

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ldamodaran's starred repositories

ggstatsplot

Enhancing {ggplot2} plots with statistical analysis 📊📣

Language:RLicense:GPL-3.0Stargazers:1965Issues:0Issues:0

MoMAColors

Color Schemes based around artwork and the Museum of Modern Art.

Language:RLicense:NOASSERTIONStargazers:181Issues:0Issues:0

TreeSort

Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.

Language:PythonStargazers:6Issues:0Issues:0

auk

Working with eBird data in R

Language:RLicense:GPL-3.0Stargazers:135Issues:0Issues:0

asm

Automatically Stopping MCMC/MC3

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Ractiters

R package for producing different types of titer plots

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patchwork

The Composer of ggplots

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subsamplerr

R package for subsampling genomic data based on epidemiological time series data.

Language:RLicense:NOASSERTIONStargazers:3Issues:0Issues:0

ggmap

A package for plotting maps in R with ggplot2

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mlesky

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SARS-CoV-2-in-Southern-Wisconsin

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seraphim

R package for studying environmental rasters and phylogenetic informed movements

Language:RStargazers:27Issues:0Issues:0

sars-cov-2_genetic_drift

Code for reproducing analysis in manuscript, "Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England"

Language:Jupyter NotebookLicense:MITStargazers:3Issues:0Issues:0

beastio

R package with functions for pre- and post-processing of BEAST and BEAST2 files.

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gams-in-r-course

Generalized Additive Models in R: A Free Interactive Course

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TTAT

Tip Trait Association Test

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delta_statistic

Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categorical trait and a phylogeny.

Language:RStargazers:22Issues:0Issues:0

physher

A multi-algorithmic framework for phylogenetic inference

Language:CLicense:GPL-2.0Stargazers:14Issues:0Issues:0

beastiary

Real time and remote MCMC trace monitoring with BEASTIARY.

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gbmunge

Munge GenBank files into FASTA and tab-separated metadata

Language:CLicense:MITStargazers:13Issues:0Issues:0

alphafold

Open source code for AlphaFold.

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flu_prediction

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oneliners

Useful bash one-liners for bioinformatics.

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Online_R_learning

Online R learning for applied statistics

License:CC0-1.0Stargazers:457Issues:0Issues:0

virusurf_downloader

virusurf downloader

Language:PythonLicense:Apache-2.0Stargazers:3Issues:0Issues:0

phylogeography-density-plots

Generate density plots from BEAST phylogeography logfiles with Bayesian Factor threshold

Language:RLicense:GPL-3.0Stargazers:2Issues:0Issues:0

stat_rethinking_2020

Statistical Rethinking Course Winter 2020/2021

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augur

Pipeline components for real-time phylodynamic analysis

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patristic

A Phylogenetics toolkit for Javascript

Language:HTMLLicense:Apache-2.0Stargazers:7Issues:0Issues:0

flu_classification_suite

:syringe: :bar_chart: Flu Classification Suite

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