lcoghill

phyloboost

Python pipeline to calculate the phylogenetic information of Genbank.

stem

OSX application to help convert between FASTA and NEXUS files, add NEXUS and MrBayes blocks for data partitioning and phylogenetic analysis.

transeeker

Transposable element identification tool

blot

Tool to semi-automate incorporating raw branch lengths into subtrees from the opentree of life project.

covid-19-exploration

hpc-intro

Lesson materials for an Introduction to High Performance Computing in the tradition of Software Carpentry

lcoghill.github.io

ofv

ORCID Formatted Vitae

opentree

Playground for tools related to the Open Tree of Life resources

rbcovarion

Scripts setting a basic working example of the Covarion model in RevBayes.

sandbox

Just a sandbox for code snippets and other useful or broken things.

snap

SNP to annotation tool

Utilities

Small utility applications and scripts to help out in various work flows.