lcoghill

vitae

R Markdown Résumés and CVs

psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

DevNet

The DevNet project on github stores the PacBio DevNet website.

yq

Command-line YAML, XML, TOML processor - jq wrapper for YAML/XML/TOML documents

redash

Make Your Company Data Driven. Connect to any data source, easily visualize, dashboard and share your data.

mutt-office365

A mutt configuration file ready for Office 365

smrnaseq

A small-RNA sequencing analysis pipeline

vim-plug

:hibiscus: Minimalist Vim Plugin Manager

julia-vim

Vim support for Julia.

leeHom

Bayesian reconstruction of ancient DNA fragments

batch_GATK_workflow

Batch script for running entire GATK workflow

gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

revbayes

Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

ecoevolity

Estimating evolutionary coevality

SCope

Fast visualization tool for large-scale and high dimensional single-cell data

SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

STAR

RNA-seq aligner

igv-jupyter

Extension for Jupyter which integrates igv.js

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

bwa-mem2

The next version of bwa-mem

awesome-expectations

Examples of great academic lab expectations, manuals, policies for joining and being in the lab

keanu

A tool for viewing the contents of metagenomic samples

Awesome-Design-Tools

The best design tools and plugins for everything 👉

JustOrthologs

pyxel

A retro game engine for Python

dash

Data Apps & Dashboards for Python. No JavaScript Required.

julia

The Julia Programming Language

al-folio

A beautiful, simple, clean, and responsive Jekyll theme for academics

hugo-blox-builder

🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！

icytree

Browser-based utility for phylogenetic tree visualisation.