lazear / mcode-rs

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mcode-rs

A fast implemention of an MCODE ("Molecular Complex Detection") related algorithm in Rust. This is a relatively simple algorithm that assigns each protein in either a BioPlex or STRING-db input database to a single protein complex, based on a k-core graph centrality heuristic. A full STRING database with ~1M edges should be completed in <60s with no intermediate caching of node weights.

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