kylebittinger

qiimer

Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R

usedist

Functions for distance matrix objects in R.

abdiv

Alpha and beta diversity measures for community ecology

brocc

Consensus taxonomy assignment for short reads (great for fungi)

polyafit

Fit data to a multivariate Polya (a.k.a. Dirichlet-multinomial) distribution

q2-brocc

QIIME 2 plugin for the BROCC taxonomic classifier

metagenomics-workshop

pheatbuilder

R library to build a heatmap in stages

biocode-review

Code review group - schedule and files

EPID674_003_taxonomy

flactrac

Flac music library management

kylemisc

A few utility functions in R

neonatal-gut-colonization

Analysis source code for "Bacterial colonization reprograms the neonatal gut metabolome"

taxafmt

bilateria

Code for generating figures and statistics for bilaterian animal microbiome project

decision-trees-tutorial

EPID674_004_phylogeny

EPID674_011_study-design

example-shotgun-analysis

heyfastq

FASTQ utilities in pure python with no dependencies

ITS_primer_trim

microbiome-data-science

Materials for Microbiome Data Science course, Spring 2024

mirix-paper

mouse_vendors_dataset

okfasta

Completely superfluous FASTA utility programs in Python

setreuler

somanytaxa

stackebrandtcurves

tablemusthave

Define and check constraints for data tables

wheelgame