Beast code in Giters

Kyle Bittinger's repositories

usedist

Functions for distance matrix objects in R.

Language:R13 2 6

abdiv

Alpha and beta diversity measures for community ecology

Language:RNOASSERTION9 2 2

brocc

Consensus taxonomy assignment for short reads (great for fungi)

Language:PythonGPL-3.07 4 4

polyafit

Fit data to a multivariate Polya (a.k.a. Dirichlet-multinomial) distribution

Language:R3 30

q2-brocc

QIIME 2 plugin for the BROCC taxonomic classifier

Language:PythonBSD-3-Clause3 2 1

unassigner

Type strain identification for 16S reads

Language:Python300

metagenomics-workshop

2 20

pheatbuilder

R library to build a heatmap in stages

Language:RGPL-3.0200

biocode-review

Code review group - schedule and files

Language:CSS1 30

EPID674_003_taxonomy

1 30

kylemisc

A few utility functions in R

Language:R1 4 2

neonatal-gut-colonization

Analysis source code for "Bacterial colonization reprograms the neonatal gut metabolome"

1 20

adonisplus

Language:RGPL-3.0010

taxafmt

Language:RNOASSERTION000

abxidx

Language:R000

decision-trees-tutorial

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EPID674_004_phylogeny

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EPID674_011_study-design

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example-shotgun-analysis

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heyfastq

FASTQ utilities in pure python with no dependencies

Language:Python000

ITS_primer_trim

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mirix-paper

Language:Shell000

mouse_vendors_dataset

030

okfasta

Completely superfluous FASTA utility programs in Python

Language:Python000

setreuler

Language:RNOASSERTION000

somanytaxa

Language:RNOASSERTION020

stackebrandtcurves

Language:Python02 5

tablemusthave

Define and check constraints for data tables

Language:Python020

unassigner_paper_figures

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wheelgame

Language:Python000