kyclark / planet-microbe-app

Planet Microbe - Semantic search across ‘omics, environmental, and physiochemical data layers.

Planet Microbe

Installation

Backend

cd backend
npm install
$(npm bin)/nodemon # dev
pm2 start --name planet-microbe-app server.js # prod

Frontend

cd frontend
npm install
elm package install
npm start # dev
npm run build # prod

Search API Examples

Query by PURL attribute

curl -s -H 'Content-Type: application/json' -d '{"http://purl.obolibrary.org/obo/ENVO_00000428":"http://purl.obolibrary.org/obo/envo_01000048"}' https://www.planetmicrobe.org/api/search | jq .sampleResults

Query by project

curl -s -H 'Content-Type: application/json' -d '{"project": "OSD"}' https://www.planetmicrobe.org/api/search | jq .sampleResults

Query by numeric attribute

curl -s -H 'Content-Type: application/json' -d '{"http://purl.obolibrary.org/obo/ENVO_09200014":"[0,10]"}' https://www.planetmicrobe.org/api/search | jq .sampleResults