Katherine Silliman's repositories
Ostrea_PopStructure
This repository contains code and notebooks detailing analyses of Genotype-by-Sequencing (GBS) data in the Olympia oyster (Ostrea lurida).
PS-Oly-Larvae-Growth
Repository for paper looking at phenotypic differences among F1 and F2 oysters from 3 populations in Puget Sound, WA.
2bRAD_GATK
Genome-wide reference-based genotyping with 2bRAD
LMB-panel-2021
Repo for Delta bass manuscript, to be available soon. Still adding some data files and comments to code, but otherwise all there.
GTseq-Pipeline
A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.
PS_CommonGarden
Working repository for project looking at genetic differences among 3 populations in Puget Sound, WA.
Rrunstruct
R package for running the program structure and comparing results from multiple runs
tourmaline
Amplicon sequence processing workflow using QIIME 2 and Snakemake