Vishal Koparde, PhD's repositories
clipperhelper
Scripts to create custom references to be used with clipper
GATK_SNP_pipeline
Call variants(SNPs) using GATK
Superparanoid
Automated inparanoid/multiparanoid
AWS_MVP_HPC
Kevin's Fork
CCBR-GitHub-Playground
This training repo is for CCBR internal devs to familiarize with GitHub operation
Dockers
A collection of Dockerfiles to facilitate reproducibility across computing environments.
fastq_screen_nf_module_testing
Testing the fastq_screen module from nf-core
MiSeq_assembly_pipeline
Assemble reads from MiSeq (or HiSeq)
plumber_testing
Developing Test API with Plumber
pyfaidx
Efficient pythonic random access to fasta subsequences
python_api_testing
Scripts to demo API calling via Python
regexcite
What the Package Does (One Line, Title Case)
SICER2
Trying to fix the GenomeData.py issue
TALON
Technology agnostic long read analysis pipeline for transcriptomes